I am running a build that was inspired by Pyroxis on Khyber that he used to get his racial reincarnations done. He did an unusual Cleric build that focused on necro insta-kill, RS, and one level of arti for repeater when he wasn't healing or using Slay Living/Destruction. Anyway, with Death Domain making this an even more useful build, I decided to try it out.
When I got to level 2, I selected Death for my domain. Then when I got to level 5 in Cleric I looked for Necrotic Ray to add to my spell bar, but it didn't appear in the feat list. In fact, the Death Domain wasn't there either. I went to Fred and he couldn't see it either. So, it seems to have deleted. I mentioned the arti portion of the build because I wondered if taking another class first caused the bug, but when I spoke to a fellow guildie he had no such problem.
And yes, I started the character after the Cleric domain roll-out. Or at least, I selected my domain at level 2 after the roll out. So, I still have the lesser heart of wood. I'll use it, although I would rather have saved it for something more useful than dealing with bugs.
Just putting it out there as a bug.